HiCShuffle is a FASTQ shuffling tool for sanity check in Hi-C differential contact analysis

Lee H, Blumberg B, Lawrence MS, & Shioda T. Revisiting the Use of Structural Similarity Index in Hi-C.


PanChIP is a pan-ChIP-seq protein colocalization analysis algorithm created in python.

Sanidas I, Lee H, Rumde PH, Boulay G, Morris R, Golczer G, Stanzione M, Hajizadeh S, Zhong J, Ryan MB, Corcoran RB, Drapkin BJ, Rivera MN, Dyson NJ, & Lawrence MS. In preparation.